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Home / Science / Biology / Bioinformatics / Online Services / Homology Detection
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Web Sites
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- Biology WorkBench - A online interface for searching protein and nucleic acid sequence databases and analyzing sequence data - from the Univ. of Illinois.
biology.ncsa.uiuc.edu
- BLAST - NCBI's sequence similarity search tool designed to support analysis of nucleotide and protein databases.
www.ncbi.nlm.nih.gov/BLAST
- DeCypher II - Smith-Waterman protein and nucleic acid database search program - from TimeLogic Corp.
decypher.stanford.edu/expsw.htm
- GeneMatcher - Access to Smith-Waterman-based FDF sequence comparison program, with excellent explanation of when to use it vs. BLAST - from the Univ. of Lausanne, FR.
www.ch.embnet.org/software/GMFDF_form.html
- GeneStream II - Sequence comparision and search programs, including the rigorous Smith-Waterman algorithm (in FastA and Ssearch) - from the IGH, Montpellier FR.
xylian.igh.cnrs.fr
- HMM library for all proteins of known structure - This is a server for structural superfamily assignments to protein sequences using Hidden Markov Models. The services included are: -homology searching -alignments -genome assignments
stash.mrc-lmb.cam.ac.uk/SUPERFAMILY
- Meta-MEME v2.0.1 - Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the Univ. of California-San Diego.
metameme.sdsc.edu
- The ISREC Group Servers - Detection and assessment of similarity between distantly related sequences by means of a variety of remotely-executable software - from the Swiss Inst. for Experimental Cancer Research.
www.isrec.isb-sib.ch
- WU-BLAST Archives - Sensitive, selective, and rapid sequence database searching with gapped alignments - from Washington Univ.-St.Louis.
blast.wustl.edu
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