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Home / Science / Biology / Genetics / Software / Quantitative Genetics
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Web Sites
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- Animal Breeding & Genetics, Wageningen - Follow the software link to find SIP (Selection Index Program), MAGGIC (Gibbs Sampling) and GENEFLOW written for animal breeders. Free software for WIN.
www.zod.wau.nl/vf/links/frame_links.html
- ASReml Cookbook - Statistical software designed for fitting mixed models for large datasets. Contains commented code for univariate and multivariate analysis including longitudinal and spatial analysis. Emphasis towards tree breeding.
uncronopio.org/luis/asreml_cookbook.html
- Blocking Gibbs Sampling for Pedigree/Linkage Analysis - Two-point linkage analysis on large, complex pedigree structures employing Markov chain Monte Carlo method, Gibbs sampling, combined with exact local computations to establish gene linkage maps. DOS and UNIX freeware.
www.cs.auc.dk/~claus/block.html
- DESIRE - Explore possible selection outcomes when goals (desired gains) are set for traits. This free WIN program is also contained in GENUP.
www-personal.une.edu.au/~bkinghor/desire.htm
- DFREML - Meyer's variance component estimation software for animal breeding is free for research purposes, available for UNIX, DOS and FORTRAN source code.
agbu.une.edu.au/~kmeyer/dfreml.html
- Finnish Forest Genetics and Tree Breeding - Links to population and quantitative genetic software of interest in tree improvement, but also useful in other species.
www.metla.fi/info/vlib/forestgen/software.htm
- GeneFlow Inc - This Virginia, USA company provides software (GeneFlow, SynerGene, QTLlocate) and services oriented towards plant breeding. Website does not give prices or operating systems supported.
www.geneflowinc.com
- Genup - Free software to assist learning quantitative genetic concepts (animal breeding) for WIN.
www-personal.une.edu.au/~bkinghor/genup.htm
- Grain Crops Breeding - Access to MQTL (simplified composite QTL mapping), MSIM and GREGOR (genetic simulation) and KIN (kinship coefficients). DOS, UNIX and PASCAL source code is free. From McGill University .
gnome.agrenv.mcgill.ca
- Ignacy Misztal - Animal breeding oriented programs for sparse matrix multiple trait REML and BLUP. Fortran source is free for research use.
nce.ads.uga.edu/~ignacy/programs.html
- Ivory Tower Software - Genetics and breeding simulation software allows students to breed virtual organisms with 2000 genes. The site gives access to a free demo version of the WIN program.
www.i-tower.com/genetics.htm
- Laboratory of Plant Breeding, Wageningen - Offers free downloadable genetics and plant breeding related software.
www.dpw.wau.nl/pv
- Pedigree Viewer - Unique display and examination tool for large pedigrees, with inbreeding and genetic merit data also. Free WIN program.
www-personal.une.edu.au/~bkinghor/pedigree.htm
- PIGBLUP and BREEDPLAN - Animal Genetics and Breeding Unit of University of New England, Australia have developed BLUP software for genetic selection of swine and beef cattle. Little information is on this site, so ABRI would have to be contacted.
abri.une.edu.au
- Quantitative Genetics Resources - List of resources with links to programs and notes on a range of subjects including animal and plant breeding, and evolutionary and human genetics.
nitro.biosci.arizona.edu/zbook/book.html
- The CompuPed 4.0 Pedigree Program - Extended & reverse pedigrees, inbreeding coefficients and genetic inheritance capabilities for Win and Mac. Download a demo or order online.
www.compuped.com
- VCE - Groeneveld's Variance Component Estimation software was developed for animal breeding problems. WIN and UNIX versions are free for research use. PEST documentation is also available here.
www.tzv.fal.de/~eg
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