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Home / Science / Biology / Bioinformatics / Online Services / Protein Analysis
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Web Sites
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- 3D-PSSM Fold Recognition Server - The 3D-PSSM server combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
www.bmm.icnet.uk/~3dpssm
- Combinatorial Extension of Polypeptides - Method for finding 3-D similarities in protein structures from the UCSD Supercomputer Center.
cl.sdsc.edu/ce.html
- Entelechon Backtranslation tool - Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage can be downloaded from a database and adjusted manually for each amino acid, if required. Java applet.
www.entelechon.com/eng/backtranslation.html
- InterPro - The Integrated Resource of Protein Domains and Functional Sites. - A database built from Pfam, PRINTS and PROSITE.
www.ebi.ac.uk/interpro
- Munich Information Center for Protein Sequences (MIPS) - Bioinformatics research group offering organism specific information (Yeast, Cress) as well as search tools for public databases.
mips.gsf.de
- Proteomics Analysis: Z3 and LabOnWeb's Z3OnWeb - Proteomic analysis for analyzing 2D-Gel images. Use Compugen's Z3 or Z3OnWeb utitlities for automatic spot detection and registration (=alignment) of protein gel images to match the spots.
www.2dgels.com
- Proteomics Tools - Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
www.expasy.ch/tools
- Quaternary Structure Prediction - This is an experimental bioinformatics server. Classifies protein sequences as homodimers or non-homodimers. Applications: metabolic reconstruction, protein structure and function assignment, drug-design, etc.
mericity.com
- Swiss-Model - Automated comparative protein modelling server to make protein modelling accessible to biochemists and molecular biologists worldwide - from GlaxoWellcome Experimental Research, Geneva, Switzerland.
www.expasy.ch/swissmod/SWISS-MODEL.html
- Swiss-Pdb Viewer - User-friendly interface allowing analysis of several proteins at once, including superimposition to deduce structural alignments, compare active sites, etc. From GlaxoWellcome Experimental Research, Geneva, Switzerland.
www.expasy.ch/spdbv
- SWISS-PROT + TrEMBL - The SWISS-PROT database contains high-quality annotation, is non-redundant and cross-referenced to many other databases. SWISS-PROT is accompanied by TrEMBL, a computer-annotated supplement, which contains the translations of all coding sequences (CDS) present in the EMBL Nucleotide Sequence Database, which are not yet integrated into SWISS-PROT.
www.ebi.ac.uk/swissprot
- The PredictProtein Server - Most widely used server for analysing protein sequences, searching protein databases, and predicting protein structure - from Columbia Univ.
dodo.cpmc.columbia.edu/predictprotein
- The Protein Information Resource - In collaboration with the Munich Information Center for Protein Sequences (MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database --- a comprehensive, annotated, and non-redundant set of protein sequence databases in which entries are classified into family groups and alignments of each group are available.
pir.georgetown.edu
- Virtual Ribosome - Instantly convert your DNA sequence into peptide in three reading frames.
www.aelfgar.com/sa/vr.html
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