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Home / Science / Biology / Biochemistry / Molecular Biology / Structure / Proteins
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Web Sites
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- Atlas of Protein Side-Chain Interactions - Modeling the packing of all 20 amino acid side-chains with one-another and with DNA - from Birkbeck and University Colleges, London.
www.biochem.ucl.ac.uk/bsm/sidechains
- Biochemistry Protein Analysis & Modelling - Structure Group with publications since 1991, offering free use of some of their programs, from London, UK.
www.biochem.ucl.ac.uk/bsm/biocomp
- CAMPASS - CAMbridge database of Protein Alignments organised as Structural Superfamilies; a database of over 5000 protein domains organized into 1067 superfamilies, including references maintained by the Department of Biochemistry, University of Cambridge, UK.
merlin.bioc.cam.ac.uk/~campass
- CASP 2002 - Fifth Critical Assessment of Protein Structure Event and protein structure prediction and alignment tools at Lawrence Livermore National Lab, Livermore, CA.
predictioncenter.llnl.gov
- Distributed Folding Project - Collaboration of teams listed alphabetically, to test protein folding algorithm for reproduction of natural protein folds by Hogue Bionformatics Research Laboratory, Samuel Lunenfeld Research Institute, Mount Sinai Hospital and University of Toronto, Canada.
www.distributedfolding.org
- Expert Protein Analysis System - ExPASy has resources dedicated to the analysis of protein sequences and structures as well as 2-D PAGE from the Swiss Institute of Bioinformatics, Geneva.
www.expasy.ch
- Folding@Home - Distributed computing project, with offer of downloadable software to join simulation effort, in discovery of protein folding mechanisms at ITSS, Stanford, CA.
folding.stanford.edu
- GEnz - Scientific research on enzyme kinetics and regulation. Technological development of enzymology and applications at University of Murcia, Spain.
www.um.es/genz
- Glucocorticoid and Nuclear Receptor Resource - Collection of individual databases on members of the steroid and thyroid hormone and their receptors from Georgetown University, Washington, DC.
nrr.georgetown.edu/GRR/GRR.html
- Histone Sequence Database - Compendium of histone protein sequence alignments, including postranslational modifications and proteins containing the histone fold, at the National Human Genome Research Institute, Bethesda, MD.
genome.nhgri.nih.gov/histones
- Hydrogen Exchange Mass Spectrometry - Analysis of proteins and protein dynamics with hydrogen exchange and mass spectrometry from Corrales, NM.
www.hxms.com/hxms.htm
- Iron-sulfur proteins - International meeting on biogenesis, structure, function, pathogenesis and evolution at Philipps Universität Marburg, Germany.
www.uni-marburg.de/cyto/FeS-meeting.htm
- Joint Protein Structure Laboratory - Databases, methods, staff, publications, news and conferences from Ludwig Institute for Cancer Research and Walter and Eliza Hall Institute of Medical Research Melbourne, Australia.
www.ludwig.edu.au/jpsl/jpslHome.html
- Lipoproteins.net - Introduction to lipid and protein complexes, such as chylomicrons and the significance of lipoproteins in health, disease and toxicology, with links to products from ALtruis LLC, AL.
www.lipoproteins.net
- NetNglyc - N-glycosylation site prediction in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons, from Center for Biological Sequence Analysis, Technical University of Denmark.
www.cbs.dtu.dk/services/NetNGlyc
- Phytase Net - Portal and information about the structure, biochemistry and application of phytase, provided by Enzyme Services & Consultancy, Blackwood, Wales, UK.
www.enzymes.co.uk/phytase/indexphytase.html
- Protein Crystallization Silicon Chip - Lysozyme as an example of crystal growth to enable structure determination by x-ray diffraction. Vapor diffusion and liquid-liquid diffusion chip options from Electronics Engineering Laboratory, Sumitomo Metal Industries, Ltd., Hyogo, Japan.
www.sumitomometals.co.jp/research/electronics/prob/index.html
- Protein Design - News and discussion in the area of protein folding, protein design, and protein tertiary structure prediction, run by David Yee from Paramount, CA.
www.proteindesign.com
- Protein Structure Initiative - Large scale attempt to determine structure of many proteins through collaborative internet based effort, maintained by Millennium Information, Inc., Cambridge, MA.
www.structuralgenomics.org
- Protein Topology - Resource providing a range of services in the area of protein topology and cartoon depictions of protein topology at Cambridge, UK.
www.sander.embl-ebi.ac.uk/tops
- Proteins Under Pressure - Research to provide insights leading to novel engineering and biotechnology applications at Rensselaer Polytechnic Institute, Troy, NY.
www.rpi.edu/web/Campus.News/dec_01/dec_03/proteins.html
- ProtoMap - An attempt to classify all proteins from SWISSPROT and TrEMBL into groups of related proteins.
protomap.cornell.edu/intro.html
- proWeb - Project to summarize features of protein families, documentation to capture biological richness through links to home pages of workers in the field from FHCRC, Seattle, WA.
www.proweb.org
- Structural Classification of Proteins - SCOP provides over 35,000 domains, excluding nucleic acids and theoretical models, with keyword search for folds, superfamilies and families statistics, and a PDB entry viewer from the MRC LMB, Cambridge, UK.
scop.mrc-lmb.cam.ac.uk/scop
- The Cyclotide Webpage - Classification, properties, potential applications and research on peptides characterized by their cyclised backbone, with an embedded cystine knot, maintained by the University of Queensland, Brisbane, Australia.
www.cyclotide.com
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